
doi: 10.1021/jo040150i
pmid: 15230592
7-deaza-2,8-diaza-2'-deoxyadenosine (4) was synthesized from 8-aza-7-deaza-2'-deoxyadenosine (1) via the 1,N(6)-etheno derivative 5. Ring opening with sodium hydroxide followed by ring closure in the presence of sodium nitrite formed the tricyclic intermediate 5 from which the transiently introduced "etheno" moiety was removed with NBS. Compound 4 was converted to the phosphoramidite 11, which was employed in solid-phase oligonucleotide synthesis. Base pairing studies on 4, incorporated in a 12-mer duplex, showed that this adenine nucleoside analogue forms a strong base pair with dG but not with dT. This novel base pair is as stable as that of the canonical dA-dT pair. As a result of the absence of nitrogen-7 compound 4 is expected to form a face to face base pair with dG.
Deoxyadenosines, Molecular Structure, Oligodeoxyribonucleotides, Cyclization, Triazines, Pyrroles, DNA, Base Pairing, Nuclear Magnetic Resonance, Biomolecular
Deoxyadenosines, Molecular Structure, Oligodeoxyribonucleotides, Cyclization, Triazines, Pyrroles, DNA, Base Pairing, Nuclear Magnetic Resonance, Biomolecular
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