
doi: 10.1021/bi971559n
pmid: 9398192
The carboxylate groups of organic acids give strong absorption in the infrared between approximately 1550 and 1650 cm-1. For acetate and chloroacetate derivatives, the infrared (IR) frequency of the carboxylate antisymmetric stretching mode (v(a)OCO) is related to the square root of the pK of the acid, with a shift of approximately 20 cm-1 to higher frequency for a pK drop in the range 5-3. It follows that v(a)OCO may respond to conditions on the protein surface. In this paper, the IR amide I' and carboxylate absorptions of cytochrome c from horse, yeast, and tuna are compared with model compounds such as Val-Glu and microperoxidase-11, the 11 amino acid fragment of horse cytochrome c containing the covalently bound heme. For microperoxidase-11, the contribution from all four carboxylates can be accounted for and the 1567 cm-1 absorption is assigned to the heme propionates. For the proteins, the carboxylate absorption band is inhomogeneous, i.e., there is a distribution of frequencies. Both the amide I' and carboxylate bands are sensitive to protein conformation as shown by their different pH, salt, and redox dependence.
Spectrophotometry, Infrared, Tuna, Molecular Sequence Data, Carboxylic Acids, Titrimetry, Water, Cytochrome c Group, Dipeptides, Peptide Fragments, Peroxidases, Species Specificity, Yeasts, Animals, Amino Acid Sequence, Horses, Deuterium Oxide
Spectrophotometry, Infrared, Tuna, Molecular Sequence Data, Carboxylic Acids, Titrimetry, Water, Cytochrome c Group, Dipeptides, Peptide Fragments, Peroxidases, Species Specificity, Yeasts, Animals, Amino Acid Sequence, Horses, Deuterium Oxide
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