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License: Elsevier Non-Commercial
Data sources: UnpayWall
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Article . 2015
License: Elsevier Non-Commercial
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Article . 2015 . Peer-reviewed
License: Elsevier Non-Commercial
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Structural Basis of Transcription Inhibition by CBR Hydroxamidines and CBR Pyrazoles

Authors: Feng, Yu; Degen, David; Wang, Xinyue; Gigliotti, Matthew; Liu, Shuang; Zhang, Yu; Das, Deepankar; +5 Authors

Structural Basis of Transcription Inhibition by CBR Hydroxamidines and CBR Pyrazoles

Abstract

CBR hydroxamidines are small-molecule inhibitors of bacterial RNA polymerase (RNAP) discovered through high-throughput screening of synthetic-compound libraries. CBR pyrazoles are structurally related RNAP inhibitors discovered through scaffold hopping from CBR hydroxamidines. CBR hydroxamidines and pyrazoles selectively inhibit Gram-negative bacterial RNAP and exhibit selective antibacterial activity against Gram-negative bacteria. Here, we report crystal structures of the prototype CBR hydroxamidine, CBR703, and a CBR pyrazole in complex with E. coli RNAP holoenzyme. In addition, we define the full resistance determinant for CBR703, show that the binding site and resistance determinant for CBR703 do not overlap the binding sites and resistance determinants of other characterized RNAP inhibitors, show that CBR703 exhibits no or minimal cross-resistance with other characterized RNAP inhibitors, and show that co-administration of CBR703 with other RNAP inhibitors results in additive antibacterial activities. The results set the stage for structure-based optimization of CBR inhibitors as antibacterial drugs.

Related Organizations
Keywords

Models, Molecular, Molecular Sequence Data, Amidines, Crystallography, X-Ray, Hydroxylamines, Ligands, Protein Structure, Secondary, Structural Biology, Chlorocebus aethiops, Escherichia coli, Animals, Humans, Amino Acid Sequence, Molecular Biology, Binding Sites, Escherichia coli Proteins, Drug Synergism, DNA-Directed RNA Polymerases, Mycobacterium tuberculosis, Anti-Bacterial Agents, HeLa Cells, Protein Binding

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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
25
Top 10%
Top 10%
Top 10%
hybrid