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Procedia Technology
Article . 2012 . Peer-reviewed
License: CC BY NC ND
Data sources: Crossref
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Procedia Technology
Article . 2012
License: CC BY NC ND
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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Multiobjective Optimization for Biomedical Named Entity Recognition and Classification

Authors: Ekbal, Asif; Saha, Sriparna; Sikdar, Utpal Kumar;

Multiobjective Optimization for Biomedical Named Entity Recognition and Classification

Abstract

AbstractNamed Entity Recognition and Classification (NERC) is one of the most fundamental and important tasks in biomedical informa–tion extraction. Biomedical named entities (NEs) include mentions of proteins, genes, DNA, RNA etc. which, in general, have complex structures and are difficult to recognize. We have developed a large number of features for identifying NEs from biomed–ical texts. Two robust diverse classification methods like Conditional Random Field (CRF) and Support Vector Machine (SVM) are used to build a number of models depending upon the various representations of the set of features and/or feature templates. Finally the outputs of these different classifiers are combined using multiobjective weighted voted approach. We hypothesize that the reliability of predictions of each classifier differs among the various output classes. Thus, in an ensemble system, it is neces–sary to determine the appropriate weight of vote for each output class in each classifier. Here, a multiobjective genetic algorithm is utilized for determining appropriate weights of votes for combining the outputs of classifiers. The developed technique is evaluated with the benchmark dataset of JNLPBA 2004 that yields the overall recall, precision and F-measure values of 74.10%, 77.58% and 75.80%, respectively.

Related Organizations
Keywords

Machine Learning, Multiobjective Optimization, Genetic Algorithm (GA), Named Entity Recognition and Classification, Classifier Ensemble

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    popularity
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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Average
Average
Average
gold