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Molecular Cell
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Molecular Cell
Article . 2006
License: Elsevier Non-Commercial
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Molecular Cell
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Molecular Cell
Article . 2006
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Mechanochemistry of Transcription Termination Factor Rho

Authors: Adelman, Joshua L.; Jeong, Yong-Joo; Liao, Jung-Chi; Patel, Gayatri; Kim, Dong-Eun; Oster, George; Patel, Smita S.;

Mechanochemistry of Transcription Termination Factor Rho

Abstract

Rho is a ring-shaped hexameric motor protein that translocates along nascent mRNA transcript and terminates transcription of select genes in bacteria. Using a numerical optimization algorithm that simultaneously fits all of the presteady-state ATPase kinetic data, we determine how Rho utilizes the chemical energy of ATP hydrolysis to translocate RNA. A random hydrolysis mechanism is ruled out by the observed inhibition of ATPase in a mixed hexamer containing wt and an inactive Rho mutant. We propose a mechanism in which (1) all six subunits are catalytically competent and hydrolyze ATP sequentially, (2) translocation of RNA is driven by the weak to tight binding transition of nucleotide in the catalytic site, (3) hydrolysis is coordinated between adjacent subunits by the transmission of stress via the catalytic arginine finger, (4) hydrolysis weakens the affinity of a subunit for RNA, and (5) the slow release of inorganic phosphate is controlled by changes in circumferential stress around the ring.

Keywords

Models, Molecular, Terminator Regions, Genetic, Binding Sites, Transcription, Genetic, Nucleotides, Protein Conformation, Hydrolysis, Cell Biology, Rho Factor, Translocation, Genetic, Phosphates, Kinetics, Protein Subunits, Adenosine Triphosphate, Mutation, RNA, Molecular Biology, Algorithms

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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
50
Top 10%
Top 10%
Top 10%
hybrid