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Mathematical Biosciences
Article . 2018 . Peer-reviewed
License: Elsevier TDM
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Article . 2018
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https://dx.doi.org/10.48550/ar...
Article . 2017
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Tree-based unrooted nonbinary phylogenetic networks

Authors: Hendriksen, Michael (S33072);

Tree-based unrooted nonbinary phylogenetic networks

Abstract

Phylogenetic networks are a generalisation of phylogenetic trees that allow for more complex evolutionary histories that include hybridisation-like processes. It is of considerable interest whether a network can be considered `tree-like' or not, which lead to the introduction of \textit{tree-based} networks in the rooted, binary context. Tree-based networks are those networks which can be constructed by adding additional edges into a given phylogenetic tree, called the \textit{base tree}. Previous extensions have considered extending to the binary, unrooted case and the nonbinary, rooted case. We extend tree-based networks to the context of unrooted, nonbinary networks in three ways, depending on the types of additional edges that are permitted. A phylogenetic network in which every embedded tree is a base tree is termed a \textit{fully tree-based} network. We also extend this concept to unrooted, nonbinary phylogenetic networks and classify the resulting networks. We also derive some results on the colourability of tree-based networks, which can be useful to determine whether a network is tree-based.

Primarily minor textual changes to improve clarity. Revision of Theorem 4.3 to include star tree case, small corrections to Lemma 5.2 and Theorem 5.3. Added acknowledgements

Related Organizations
Keywords

Applications of graph theory, phylogeny, phylogenetic networks, Problems related to evolution, XXXXXX - Unknown, FOS: Mathematics, Mathematics - Combinatorics, Quantitative Biology - Populations and Evolution, Phylogeny, Models, Genetic, Populations and Evolution (q-bio.PE), 005, unrooted, nonbinary networks, bioinformatics, trees, Mathematical Concepts, Biological Evolution, phylogenetic trees, tree-based networks, FOS: Biological sciences, Combinatorics (math.CO), Algorithms

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
9
Top 10%
Average
Top 10%
Green
bronze