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Mathematical Biosciences
Article . 2007 . Peer-reviewed
License: Elsevier TDM
Data sources: Crossref
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Article . 2007
Data sources: zbMATH Open
https://dx.doi.org/10.48550/ar...
Article . 2006
License: arXiv Non-Exclusive Distribution
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Fluctuations, responses and energetics of molecular motors

Authors: Harada, Takahiro; Sasa, Shin-Ichi;

Fluctuations, responses and energetics of molecular motors

Abstract

A novel equality relating the rate of energy dissipation to a degree of violation of the fluctuation-response relation (FRR) in nonequilibrium Langevin systems is described. The FRR is a relation between the correlation function of the fluctuations and the response function of macroscopic variables. Although it has been established that the FRR holds in equilibrium, physical significance of violation of the FRR in nonequilibrium systems has been under debate. Recently, the authors have found that an extent of the FRR violation is related in a simple equality to the rate of energy dissipation into the environment in nonequilibrium Langevin systems. In this paper, we fully explain the FRR, the FRR violation, and the new equality with regard to a Langevin model termed a Brownian motor model, which is considered as a simple model of a biological molecular motor. Furthermore, applications of our result to experimental studies of molecular motors are discussed, and, as an illustration, we predict the value of a new time constant regarding the motion of a KIF1A, which is a kind of single-headed kinesin.

22 pages, 3 figures, submitted to Mathematical Biosciences

Related Organizations
Keywords

mechano-chemical enzymes, fluctuations, Biophysics, Kinesins, FOS: Physical sciences, Nerve Tissue Proteins, Condensed Matter - Soft Condensed Matter, Models, Biological, Adenosine Triphosphate, Medical applications (general), Animals, Humans, Diffusion processes, Condensed Matter - Statistical Mechanics, energetics, response, Fourier Analysis, Statistical Mechanics (cond-mat.stat-mech), path-integral representation, Molecular Motor Proteins, Biomechanical Phenomena, molecular motor, Brownian motor model, Thermodynamics, Soft Condensed Matter (cond-mat.soft), Brownian motion, Energy Metabolism, Algorithms

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
12
Average
Average
Average
Green
bronze