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Journal of Molecular Biology
Article . 2011 . Peer-reviewed
License: Elsevier TDM
Data sources: Crossref
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Interstitial Contacts in an RNA-Dependent RNA Polymerase Lattice

Authors: Elizabeth J. Tanner; Jeannie F. Spagnolo; Esther Bullitt; Jing Wang; Karla Kirkegaard; Andres B. Tellez;

Interstitial Contacts in an RNA-Dependent RNA Polymerase Lattice

Abstract

Catalytic activities can be facilitated by ordered enzymatic arrays that co-localize and orient enzymes and their substrates. The purified RNA-dependent RNA polymerase from poliovirus self-assembles to form two-dimensional lattices, possibly facilitating the assembly of viral RNA replication complexes on the cytoplasmic face of intracellular membranes. Creation of a two-dimensional lattice requires at least two different molecular contacts between polymerase molecules. One set of polymerase contacts, between the "thumb" domain of one polymerase and the back of the "palm" domain of another, has been previously defined. To identify the second interface needed for lattice formation and to test its function in viral RNA synthesis, we used a hybrid approach of electron microscopic and biochemical evaluation of both wild-type and mutant viral polymerases to evaluate computationally generated models of this second interface. A unique solution satisfied all constraints and predicted a two-dimensional structure formed from antiparallel arrays of polymerase fibers that use contacts from the flexible amino-terminal region of the protein. Enzymes that contained mutations in this newly defined interface did not form lattices and altered the structure of wild-type lattices. When reconstructed into virus, mutations that disrupt lattice assembly exhibited growth defects, synthetic lethality or both, supporting the function of the oligomeric lattice in infected cells. Understanding the structure of polymerase lattices within the multimeric RNA-dependent RNA polymerase complex should facilitate antiviral drug design and provide a precedent for other positive-strand RNA viruses.

Related Organizations
Keywords

Models, Molecular, Protein Conformation, RNA-Dependent RNA Polymerase, Models, Biological, Protein Structure, Secondary, Poliovirus, Amino Acid Substitution, Mutagenesis, Site-Directed, Protein Interaction Domains and Motifs, Protein Interaction Maps, Protein Multimerization, Protein Structure, Quaternary, Protein Binding

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    16
    popularity
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
16
Average
Average
Top 10%
bronze