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Journal of Molecular Biology
Article . 2003 . Peer-reviewed
License: Elsevier TDM
Data sources: Crossref
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The Death-domain Fold of the ASC PYRIN Domain, Presenting a Basis for PYRIN/PYRIN Recognition

Authors: Liepinsh, Edvards; Barbals, Raitis; Dahl, Edgar; Sharipo, Anatoly; Staub, Eike; Otting, Gottfried;

The Death-domain Fold of the ASC PYRIN Domain, Presenting a Basis for PYRIN/PYRIN Recognition

Abstract

The PYRIN domain is a conserved sequence motif identified in more than 20 human proteins with putative functions in apoptotic and inflammatory signalling pathways. The three-dimensional structure of the PYRIN domain from human ASC was determined by NMR spectroscopy. The structure determination reveals close structural similarity to death domains, death effector domains, and caspase activation and recruitment domains, although the structural alignment with these other members of the death-domain superfamily differs from previously predicted amino acid sequence alignments. Two highly positively and negatively charged surfaces in the PYRIN domain of ASC result in a strong electrostatic dipole moment that is predicted to be present also in related PYRIN domains. These results suggest that electrostatic interactions play an important role for the binding between PYRIN domains. Consequently, the previously reported binding between the PYRIN domains of ASC and ASC2/POP1 or between the zebrafish PYRIN domains of zAsc and Caspy is proposed to involve interactions between helices 2 and 3 of one PYRIN domain with helices 1 and 4 of the other PYRIN domain, in analogy to previously reported homophilic interactions between caspase activation and recruitment domains.

Country
Australia
Keywords

Models, Molecular, Protein Folding, Magnetic Resonance Spectroscopy, 572, Protein Conformation, Molecular Sequence Data, protein binding, protein Death-domain superfamily, Protein Structure, Secondary, electric activity, Human ASC, NMR spectroscopy, protein folding, Animals, Humans, DNA helix, Amino Acid Sequence, Cloning, Molecular, comparative study, Models, Statistical, Sequence Homology, Amino Acid, PYRIN domain, apoptosis, article, protein domain, 500, Proteins, enzyme activation, Pyrin, protein family, amino acid sequence, Protein Structure, Tertiary, CARD Signaling Adaptor Proteins, Cytoskeletal Proteins, priority journal, Keywords: caspase, inflammation, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Three-dimensional protein structure, protein, protein determination, Protein Binding, Signal Transduction

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
141
Top 10%
Top 10%
Top 10%
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