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Journal of Biotechnology
Article . 2005
License: CC BY NC ND
Data sources: Ciência-UCP
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Journal of Biotechnology
Article . 2005 . Peer-reviewed
License: Elsevier TDM
Data sources: Crossref
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Molecular characterisation of a versatile peroxidase from a Bjerkandera strain

Authors: Moreira, Patrícia R.; Duez, C.; Dehareng, D.; Antunes, A.; Almeida-Vara, E.; Frère, J. M.; Malcata, F. Xavier; +1 Authors

Molecular characterisation of a versatile peroxidase from a Bjerkandera strain

Abstract

The cloning and sequencing of the rbpa gene coding for a versatile peroxidase from a novel Bjerkandera strain is hereby reported. The 1777 bp isolated fragment contained a 1698 bp peroxidase-encoding gene, interrupted by 11 introns. The 367 amino acid-deduced sequence includes a 27 amino acid-signal peptide. The molecular model, built via homology modelling with crystal structures of four fungal peroxidases, highlighted the amino acid residues putatively involved in manganese binding and aromatic substrate oxidation. The potential heme pocket residues (R44, F47, H48, E79, N85, H177, F194 and D239) include both distal and proximal histidines (H48 and H177). RBP possesses potential calcium-binding residues (D49, G67, D69, S71, S178, D195, T197, I200 and D202) and eight cysteine residues (C3, C15, C16, C35, C121, C250, C286, C316). In addition, RBP includes residues involved in substrate oxidation: three acidic residues (E37, E41 and D183)--putatively involved in manganese binding and H83 and W172--potentially involved in oxidation of aromatic substrates. Characterisation of nucleotide and amino acid sequences include RBP in versatile peroxidase group sharing catalytic properties of both LiP and MnP. In addition, the RBP enzyme appears to be closely related with the ligninolytic peroxidases from the Trametes versicolor strain.

Countries
Belgium, Portugal
Keywords

Molecular Sequence Data, Biotechnologie, white-rot fungi, Microbiology, Fungal Proteins, Microbiologie, Tertiary structure, rbpa gene, Ligninolytic peroxidases, Cloning, Molecular, cloning and sequencing, Phylogeny, Peroxidase, Base Sequence, Cloning and sequencing, Basidiomycota, ligninolytic peroxidases, Life sciences, Introns, Rbpa gene, Protein Structure, Tertiary, White-rot fungi, Sciences du vivant, tertiary structure, Biotechnology

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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