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The catalytic domain of MMP‐1 studied through tagged lanthanides

Authors: BERTINI, IVANO; CALDERONE, VITO; CEROFOLINI, LINDA; FRAGAI, MARCO; C. F. Geraldes; P. Hermann; LUCHINAT, CLAUDIO; +2 Authors

The catalytic domain of MMP‐1 studied through tagged lanthanides

Abstract

Pseudocontact shifts (pcs) and paramagnetic residual dipolar couplings (rdc) provide structural information that can be used to assess the adequacy of a crystallographic structure to represent the solution structure of a protein. This can be done by attaching a lanthanide binding tag to the protein. There are cases in which only local rearrangements are sufficient to match the NMR data and cases where significant secondary structure or domain rearrangements from the solid state to the solution state are needed. We show that the two cases are easily distinguishable. Whereas the use of solution restraints in the latter case is described in the literature, here we deal with how to obtain a better model of the solution structure in a case (the catalytic domain of the matrix metalloproteinase MMP‐1) of the former class.

Country
Italy
Keywords

Models, Molecular, Magnetic Resonance Spectroscopy, Paramagnetic restraint; paramagnetic tag; lanthanide; matrix metalloproteinase; residual dipolar coupling, Protein Conformation, Residual dipolar coupling, Crystallography, X-Ray, Research Infrastructures, Lanthanoid Series Elements, Protein Structure, Secondary, Lanthanide, Catalytic Domain, Paramagnetic tag, Doutoramento, European Commission, SP4-Capacities, Paramagnetic restraint, FP7, EGI Federation, EC, WENMR, SP1-Cooperation, projects, SFRH, FCT, Matrix metalloproteinase, Solutions, Fundação para a Ciência e a Tecnologia, I.P., Health, egi, Matrix Metalloproteinase 1

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
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48
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15
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