Abstract The Delaware Bay ecosystem has been the focus of extensive habitat restoration efforts to offset finfish losses due to mortality associated with power plant water intake. As a result, a 45 km 2 or a 3% increase in total marsh area was achieved by 1996–1997 through the restoration efforts of the Public Service Enterprise Group (PSEG). To quantify the impact of restoration efforts on system productivity, an Ecopath with Ecosim model was constructed that represented all major components of the ecosystem. The model consisted of 47 functional groups including: 27 fish species, 5 invertebrate groups, 4 multi-species benthic groups, 6 multi-species fish groups, 3 plankton groups, 1 shorebird group and 1 marine mammal group. Biomass, abundance, catch, and demographic data were obtained from the literature or from individual stock assessments conducted for principal ecosystem components. A base Ecosim model was fitted to time series of key species in the Bay representing the period 1966–2003. To access the gains from marsh restoration, model simulations reflecting no restoration were conducted to estimate the productivity that would have been lost if restoration efforts had not occurred. The results indicated that restoration increased total ecosystem biomass by 47.7 t km −2 year −1 . Simulations indicated increased biomasses across a wide range of species including important forage and commercially important species. The marsh restoration also significantly impacted ecosystem structure increasing the ratio of production-to-respiration, increasing system path length and decreasing the ratio of production-to-biomass.