
pmid: 19616477
Detection of foldable subunits in proteins is an important approach to understand their evolutions and find building motifs for de novo protein design. Using united-residue model, we simulated the folding of a six-helix protein with a length of 120 amino acids (C-terminal domain of Ku86). The folding behaviors, structural topology and sequence repetition of this protein all suggest that it may have a two-fold quasi-repetition or symmetry in its sequence and structure. Therefore, we simulated the folding of its two halves (1-60 and 61-120 amino acids) and find that they can fold into native conformations independently. It is also found that their folding behaviors are very similar to other three-helix bundles. This suggests that this protein may be divided into two foldable halves.
DNA-Binding Proteins, Models, Molecular, Protein Folding, Protein Subunits, Animals, Antigens, Nuclear, Computer Simulation, Ku Autoantigen
DNA-Binding Proteins, Models, Molecular, Protein Folding, Protein Subunits, Animals, Antigens, Nuclear, Computer Simulation, Ku Autoantigen
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