
Multiple factors influence translation termination efficiency, including nonsense codon identity and immediate context. To determine whether the relative position of a nonsense codon within an open reading frame (ORF) influences termination efficiency, we quantitate the production of prematurely terminated and/or readthrough polypeptides from 26 nonsense alleles of 3 genes expressed in yeast. The accumulation of premature termination products and the extent of readthrough for the respective premature termination codons (PTCs) manifest a marked dependence on PTC proximity to the mRNA 3' end. Premature termination products increase in relative abundance, whereas readthrough efficiencies decrease progressively across different ORFs, and readthrough efficiencies for a PTC increase in response to 3' UTR lengthening. These effects are eliminated and overall translation termination efficiency decreases considerably in cells harboring pab1 mutations. Our results support a critical role for poly(A)-binding protein in the regulation of translation termination and also suggest that inefficient termination is a trigger for nonsense-mediated mRNA decay (NMD).
Saccharomyces cerevisiae Proteins, QH301-705.5, Biophysics, Saccharomyces cerevisiae, Biochemistry, Poly(A)-Binding Proteins, Open Reading Frames, Nucleic Acids, NMD, RNA, Messenger, Amino Acids, Biology (General), 3' Untranslated Regions, nonsense codon, Pab1, Nucleotides, poly(A), and Proteins, Peptide Chain Termination, Translational, and Nucleosides, Nonsense Mediated mRNA Decay, Cellular and Molecular Physiology, PTC, Codon, Nonsense, Protein Biosynthesis, readthrough, and Structural Biology, Codon, Terminator, Peptides
Saccharomyces cerevisiae Proteins, QH301-705.5, Biophysics, Saccharomyces cerevisiae, Biochemistry, Poly(A)-Binding Proteins, Open Reading Frames, Nucleic Acids, NMD, RNA, Messenger, Amino Acids, Biology (General), 3' Untranslated Regions, nonsense codon, Pab1, Nucleotides, poly(A), and Proteins, Peptide Chain Termination, Translational, and Nucleosides, Nonsense Mediated mRNA Decay, Cellular and Molecular Physiology, PTC, Codon, Nonsense, Protein Biosynthesis, readthrough, and Structural Biology, Codon, Terminator, Peptides
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