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Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing

Authors: Freund, Emily C.; Sapiro, Anne L.; Li, Qin; Linder, Sandra; Moresco, James J.; Yates III, John R.; Li, Jin Billy;

Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing

Abstract

Abstract Adenosine-to-Inosine RNA editing is catalyzed by ADAR enzymes that deaminate adenosine to inosine. While many RNA editing sites are known, few trans regulators have been identified. We perform BioID followed by mass-spectrometry to identify trans regulators of ADAR1 and ADAR2 in HeLa and M17 neuroblastoma cells. We identify known and novel ADAR-interacting proteins. Using ENCODE data we validate and characterize a subset of the novel interactors as global or site-specific RNA editing regulators. Our set of novel trans regulators includes all four members of the DZF-domain-containing family of proteins: ILF3, ILF2, STRBP, and ZFR. We show that these proteins interact with each ADAR and modulate RNA editing levels. We find ILF3 is a global negative regulator of editing. This work demonstrates the broad roles RNA binding proteins play in regulating editing levels and establishes DZF-domain containing proteins as a group of highly influential RNA editing regulators.

Related Organizations
Keywords

A-to-I RNA editing, QH301-705.5, Adenosine Deaminase, RNA-Binding Proteins, ILF2, ADAR, ILF3, Mass Spectrometry, STRBP, Neuroblastoma, Cell Line, Tumor, Humans, RNA Editing, BioID, Biology (General), HeLa Cells

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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
63
Top 1%
Top 10%
Top 10%
Green
gold