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Single-Cell Dynamics of Genome-Nuclear Lamina Interactions

Authors: Kind, Jop; Pagie, Ludo; Ortabozkoyun, Havva; Boyle, Shelagh; De vries, Sandra s.; Janssen, Hans; Amendola, Mario; +3 Authors

Single-Cell Dynamics of Genome-Nuclear Lamina Interactions

Abstract

The nuclear lamina (NL) interacts with hundreds of large genomic regions termed lamina associated domains (LADs). The dynamics of these interactions and the relation to epigenetic modifications are poorly understood. We visualized the fate of LADs in single cells using a "molecular contact memory" approach. In each nucleus, only ~30% of LADs are positioned at the periphery; these LADs are in intermittent molecular contact with the NL but remain constrained to the periphery. Upon mitosis, LAD positioning is not detectably inherited but instead is stochastically reshuffled. Contact of individual LADs with the NL is linked to transcriptional repression and H3K9 dimethylation in single cells. Furthermore, we identify the H3K9 methyltransferase G9a as a regulator of NL contacts. Collectively, these results highlight principles of the dynamic spatial architecture of chromosomes in relation to gene regulation.

Countries
Italy, France
Keywords

[SDV.MHEP.HEM] Life Sciences [q-bio]/Human health and pathology/Hematology, Genome, Nuclear Lamina, Biochemistry, Genetics and Molecular Biology(all), Adenine, Mitosis, Histone-Lysine N-Methyltransferase, DNA Methylation, Chromosomes, [SDV.BIO] Life Sciences [q-bio]/Biotechnology, Gene Expression Regulation, Cell Line, Tumor, Heterochromatin, Histocompatibility Antigens, Humans, Single-Cell Analysis, [SDV.BC] Life Sciences [q-bio]/Cellular Biology

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    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    624
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 0.1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 1%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 0.1%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
624
Top 0.1%
Top 1%
Top 0.1%
hybrid