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Biophysical Journal
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Biophysical Journal
Article . 2010
License: Elsevier Non-Commercial
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Biophysical Journal
Article . 2010 . Peer-reviewed
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Activation Pathways of Agonists, Partial Agonists and Inverse Agonist in Beta1 and Beta2 Adrenergic Receptors

Authors: Supriyo Bhattacharya; Nagarajan Vaidehi;

Activation Pathways of Agonists, Partial Agonists and Inverse Agonist in Beta1 and Beta2 Adrenergic Receptors

Abstract

Modulation of cell signaling by ligands of different efficacies via G-protein coupled receptors (GPCRs), depends intrinsically on the effect of the ligand on the dynamics between the multiple conformational states of these proteins. Ligands with different efficacies can remodel the energy landscape of the receptors, thereby perturbing this conformational equilibrium in many ways depending on the nature of the ligand, and the G-proteins that the receptor couples to, thereby conferring functional specificity. Understanding activation dynamics and pathways is vital in designing functionally specific drugs for GPCRs.Starting from the crystal structure of beta2-adrenergic receptor (B2AR), we have used LITiCon computational method to predict the ligand stabilized receptor state with full (epinephrine and norepinephrine), partial (salbutamol and dopamine), and inverse agonists (carazolol) bound. We have calculated the minimum energy pathway going from the inactive to the ligand stabilized state for each of the ligand/receptor complex. The activation pathways derived for all the agonists studied here are in agreement with fluorescence lifetime measurements1,2. We have also studied the norepinephrine activation pathway for the mutant m23 avian beta1-adrenergic receptor (B1AR) that has been crystallized, and the wild type B1AR. We show that the activation barrier for activation of the mutant m23B1AR by norepinephrine, is larger than for the wildtype B1AR, which is in agreement with the previous experimental finding that m23B1AR requires higher concentration of norepinephrine for activation3.Virtual ligand screening with the salbutamol-stabilized B2AR conformation shows enrichment of non-catechol agonists over norepinephrine-stabilized conformation. Our computational method provides an unprecedented opportunity to understand activation mechanisms in GPCRs.1. Swaminath G, et al. (2004), J. Biol. Chem. 279:686-691.2. Swaminath G, et al. (2005) , J. Biol. Chem. 280:22165-22171.3. Warne T., et. Al., (2008), Nature, 454, 486-491.

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Biophysics

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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