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Biochemical and Biophysical Research Communications
Article . 2016 . Peer-reviewed
License: CC BY
Data sources: Crossref
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The role of stabilization centers in protein thermal stability

Authors: Magyar, Csaba; Gromiha, M. Michael; Sávoly, Zoltán; Simon, István;

The role of stabilization centers in protein thermal stability

Abstract

The definition of stabilization centers was introduced almost two decades ago. They are centers of noncovalent long range interaction clusters, believed to have a role in maintaining the three-dimensional structure of proteins by preventing their decay due to their cooperative long range interactions. Here, this hypothesis is investigated from the viewpoint of thermal stability for the first time, using a large protein thermodynamics database. The positions of amino acids belonging to stabilization centers are correlated with available experimental thermodynamic data on protein thermal stability. Our analysis suggests that stabilization centers, especially solvent exposed ones, do contribute to the thermal stabilization of proteins.

Country
Hungary
Keywords

Thermophiles, Models, Molecular, Protein Denaturation, Hot Temperature, Protein Conformation, Molecular Sequence Data, Biophysics, Stability changing mutations, Biochemistry, Structure-Activity Relationship, Protein stability, Transition Temperature, QH3020 Biophysics / biofizika, Computer Simulation, Amino Acid Sequence, Amino Acids, Molecular Biology, QH3011 Biochemistry / biokémia, Protein Stability, Proteins, Stabilization centers, Thermal stability, Cell Biology, Protein Structure, Tertiary, Models, Chemical, Thermodynamics

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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
11
Average
Average
Top 10%
Green
hybrid