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Biochemical and Biophysical Research Communications
Article . 2012 . Peer-reviewed
License: CC BY NC ND
Data sources: Crossref
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CpG site-specific alteration of hydroxymethylcytosine to methylcytosine beyond DNA replication

Authors: Kubosaki, Atsutaka; Tomaru, Yasuhiro; Furuhata, Erina; Suzuki, Takahiro; Shin, Jay W.; Simon, Christophe; Ando, Yoshinari; +3 Authors

CpG site-specific alteration of hydroxymethylcytosine to methylcytosine beyond DNA replication

Abstract

Hydroxymethylcytosines (hmC), one of several reported cytosine modifications, was recently found to be enriched in embryonic stem cells and neuronal cells, and thought to play an important role in regulating gene expression and cell specification. However, unlike methylcytosines (mC), the fate of hmC beyond DNA replication is not well understood. Here, to monitor the status of hmC during DNA replication, we prepared a stable episomal vector-based monitoring system called MoCEV in 293T cells. The MoCEV system containing fully hydroxymethylated-cytosine fragments revealed a significant modification towards mC after several rounds of DNA replication. Strikingly this modification was specifically observed at the CpG sites (71.9% of cytosines), whereas only 1.1% of modified cytosines were detected at the non-CpG sites. Since the unmodified MoCEV did not undergo any DNA methylation during cell division, the results strongly suggest that somatic cells undergo hmC to mC specifically at the CpG sites during cell division.

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Keywords

DNA Replication, Base Sequence, Methylcytosine, Genetic Vectors, Biophysics, Cell Biology, DNA replication, DNA Methylation, Biochemistry, Polymerase Chain Reaction, Cytosine, HEK293 Cells, DNA demethylation, Hydroxymethylcytosine, 5-Methylcytosine, Humans, CpG Islands, Bisulfite sequencing, Molecular Biology, Episomal vector

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
6
Average
Average
Average
hybrid