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Biochimica et Biophysica Acta (BBA) - Bioenergetics
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Biochimica et Biophysica Acta (BBA) - Bioenergetics
Article . 2014
License: Elsevier Non-Commercial
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Biochimica et Biophysica Acta (BBA) - Bioenergetics
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Charge transfer through a cytochrome multiheme chain: Theory and simulation

Authors: Burggraf, Fabian; Koslowski, Thorsten;

Charge transfer through a cytochrome multiheme chain: Theory and simulation

Abstract

We study sequential charge transfer within a chain of four heme cofactors located in the c-type cytochrome subunit of the photoreaction center of Rhodopseudomonas viridis from a theoretical perspective. Molecular dynamics simulations of the thermodynamic integration type are used to compute two key energies of Marcus' theory of charge transfer, the driving force ∆G and the reorganization energy λ. Due to the small exposure of the cofactors to the solvent and to charged amino acids, the outer sphere contribution to the reorganization energy almost vanishes. Interheme effective electronic couplings are estimated using ab initio wave functions and a well-parameterized semiempirical scheme for long-range interactions. From the resulting charge transfer rates, we conclude that at most the two heme molecules closest to the membrane participate in a fast recharging of the photoreaction center, whereas the remaining hemes are likely to have a different function, such as intermediate electron storage. Finally, we suggest means to verify or falsify this hypothesis.

Country
Germany
Keywords

Simulations, Biophysics, Marcus Theorie, Electrons, Heme, Molecular dynamics, Molecular Dynamics Simulation, Häm, Biochemistry, Electron Transport, Ladungstransfer, Charge transfer, Cytochrom c, Su-Schrieffer-Heeger Modell, Amino Acids, Photosynthese, Cytochromes c, Cell Biology, Thermodynamische Integration, Kinetics, Rhodopseudomonas, Photoreaction center, Thermodynamics, Rps. viridis, Energy Metabolism, Marcus theory

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
14
Average
Average
Top 10%
hybrid