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Archives of Biochemistry and Biophysics
Article . 2025 . Peer-reviewed
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Phylogenetic and structural analysis of Hydra ADAR

Authors: Xander E. Wilcox; Howard Zhang; Jasmine L. Mah; Jack F. Cazet; Sukanya Mozumder; Srinidhi Venkatesh; Celina E. Juliano; +2 Authors

Phylogenetic and structural analysis of Hydra ADAR

Abstract

Adenosine deaminases acting on RNAs (ADARs) perform adenosine-to-inosine (A-to-I) RNA editing for essential biological functions. While studies of editing sites in diverse animals have revealed unique biological roles of ADAR editing including temperature adaptation and reproductive maturation, rigorous biochemical and structural studies of these ADARs are lacking. Here, we present a phylogenetic sequence analysis and AlphaFold computational structure prediction to reveal that medusozoan ADAR2s contain five dsRNA binding domains (dsRBDs) with several RNA binding residues in the dsRBDs and deaminase domain conserved. Additionally, we identified evolutionary divergence between the medusozoan (e.g. Hydra) and anthozoan cnidarian subphyla. The anthozoan ADAR deaminase domains more closely resembling human ADARs with longer 5' RNA binding loops, glutamate base-flipping residues, and a conserved TWDG dimerization motif. Conversely, medusozoan ADAR deaminase domains have short 5' binding loops, glutamine flipping residues, and non-conserved helix dimerization motif. We also report the direct detection of A-to-I RNA editing by an ADAR ortholog from the freshwater cnidarian Hydra vulgaris (hyADAR). We solved the crystal structure of the monomeric deaminase domain of hyADAR (hyADARd) to 2.0 Å resolution, showing conserved active site architecture and the presence of a buried inositol hexakisphosphate known to be required for ADAR activity. In addition, these data demonstrate that medusozoans have evolved novel ADAR structural features, however the physiological consequence of this remains unknown. In addition, these results provide a framework for biochemically and structurally characterizing ADARs from evolutionarily distant organisms to understand the diverse roles of ADAR editing amongst metazoans.

Country
United States
Keywords

1.1 Normal biological development and functioning (hrcs-rac), Humans (mesh), RNA editing, 31 Biological Sciences (for-2020), Genetics (rcdc), 3102 Bioinformatics and Computational Biology (for-2020), Generic health relevance (hrcs-hc), 0601 Biochemistry and Cell Biology (for), Amino Acid Sequence (mesh), Phylogeny (mesh), Biochemistry & Molecular Biology (science-metrix), Hydra (mesh), 3101 Biochemistry and Cell Biology (for-2020), Molecular (mesh), Models, Adenosine deaminase acting on RNA, Protein Domains (mesh), Animals (mesh), Adenosine Deaminase (mesh), RNA Editing (mesh), Hydra vulgaris, Structural biology, 3101 Biochemistry and cell biology (for-2020)

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
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