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FEBS Letters
Article . 1996 . Peer-reviewed
License: Wiley Online Library User Agreement
Data sources: Crossref
FEBS Letters
Article . 1996
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Role of base‐backbone and base‐base interactions in alternating DNA conformations

Authors: Masashi Suzuki; Naoto Yagi; John T. Finch;

Role of base‐backbone and base‐base interactions in alternating DNA conformations

Abstract

Sequence‐specific conformational differences between dinucleotide steps are characterised using published crystal coordinates with special attention to steric hindrance of the methyl group of a T base to the neighbouring base, and, more importantly, to the sugar‐phosphate backbone. The TT step is inflexible and B‐like, as it has two methyl groups which interlock with each other and with the sugar‐phosphate backbones. AT slides, or overtwists, so that the methyl groups move away from the backbones, both lead the step towards the A‐conformation. TA is most flexible as it does not have such restriction. These characteristics are observed with other pyrimidine‐pyrimidine, pyrimidine‐purine, purine‐pyrimidine steps, respectively, but to less extent, depending on the number of non‐A: T basepairs in the steps.

Keywords

Models, Molecular, Base Sequence, Databases, Factual, Crystal structure, Hydrogen Bonding, DNA, Crystallography, X-Ray, Nucleic acid, Nucleic Acid Conformation, Sequence-structure correlation, Structural biology, Dinucleoside Phosphates

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    influence
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
45
Average
Top 10%
Top 10%