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Journal of Biosciences
Article . 2013 . Peer-reviewed
License: Springer TDM
Data sources: Crossref
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An algorithm to find all palindromic sequences in proteins

Authors: Prasanth, N; Vaishnavi, Kirti M; Sekar, K;

An algorithm to find all palindromic sequences in proteins

Abstract

A palindrome is a set of characters that reads the same forwards and backwards. Since the discovery of palindromic peptide sequences two decades ago, little effort has been made to understand its structural, functional and evolutionary significance. Therefore, in view of this, an algorithm has been developed to identify all perfect palindromes (excluding the palindromic subset and tandem repeats) in a single protein sequence. The proposed algorithm does not impose any restriction on the number of residues to be given in the input sequence. This avant-garde algorithm will aid in the identification of palindromic peptide sequences of varying lengths in a single protein sequence.

Country
India
Keywords

Repetitive Sequences, Amino Acid, Amino Acid Motifs, Molecular Sequence Data, Chlorobium, Rats, Histones, Mice, Bacterial Proteins, Sequence Analysis, Protein, Animals, Supercomputer Education & Research Centre, Algorithms

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    popularity
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    influence
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
4
Average
Average
Average
Green
gold