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Bulletin of Mathematical Biology
Article . 2014 . Peer-reviewed
License: Springer TDM
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zbMATH Open
Article . 2014
Data sources: zbMATH Open
https://dx.doi.org/10.48550/ar...
Article . 2013
License: arXiv Non-Exclusive Distribution
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Translated Chemical Reaction Networks

Translated chemical reaction networks
Authors: Johnston, Matthew D.;

Translated Chemical Reaction Networks

Abstract

Many biochemical and industrial applications involve complicated networks of simultaneously occurring chemical reactions. Under the assumption of mass action kinetics, the dynamics of these chemical reaction networks are governed by systems of polynomial ordinary differential equations. The steady states of these mass action systems have been analysed via a variety of techniques, including elementary flux mode analysis, algebraic techniques (e.g. Groebner bases), and deficiency theory. In this paper, we present a novel method for characterizing the steady states of mass action systems. Our method explicitly links a network's capacity to permit a particular class of steady states, called toric steady states, to topological properties of a related network called a translated chemical reaction network. These networks share their reaction stoichiometries with their source network but are permitted to have different complex stoichiometries and different network topologies. We apply the results to examples drawn from the biochemical literature.

Keywords

Biochemistry, molecular biology, Molecular Networks (q-bio.MN), Dynamical Systems (math.DS), 80A30, 90C35, Kinetics, Models, Chemical, chemical kinetics, FOS: Biological sciences, FOS: Mathematics, weakly reversible, steady state, mass action system, Quantitative Biology - Molecular Networks, Computer Simulation, complex balancing, Mathematics - Dynamical Systems, Classical flows, reactions, etc. in chemistry

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
42
Top 10%
Top 10%
Top 10%
Green
bronze