Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Journal of Fluoresce...arrow_drop_down
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
Journal of Fluorescence
Article . 2006 . Peer-reviewed
License: Springer TDM
Data sources: Crossref
versions View all 2 versions
addClaim

This Research product is the result of merged Research products in OpenAIRE.

You have already added 0 works in your ORCID record related to the merged Research product.

Confocal Fluorescence Recovery After Photobleaching of Green Fluorescent Protein in Solution

Authors: Thomas J, Pucadyil; Amitabha, Chattopadhyay;

Confocal Fluorescence Recovery After Photobleaching of Green Fluorescent Protein in Solution

Abstract

Fluorescence recovery after photobleaching (FRAP) is one of the most widely used approaches to quantitatively estimate diffusion characteristics of molecules in solution and cellular systems. In general, comparison of the diffusion times (t (1/2)) from a FRAP experiment provides qualitative estimates of diffusion rates. However, obtaining consistent and reliable quantitative estimates of mobility of molecules using FRAP is hindered by the lack of appropriate standards for calibrating the FRAP set-up (microscope configuration and data fitting algorithms) used in a given experiment. In comparison with other fluorescent markers, the green fluorescent proteins (GFP) possess characteristics that are ideal for use in such experiments. We have monitored the mobility of pure enhanced green fluorescent protein (EGFP) in a viscous solution by confocal FRAP experiments. Our experimentally determined diffusion coefficient of EGFP in a glycerol-water mixture is in excellent agreement with the value predicted for GFP in a solution of comparable viscosity, calculated using the Stokes-Einstein equation. The agreement in the experimentally determined diffusion coefficient and that predicted from theoretical framework improves significantly when one takes into account the effective size of the bleached spot in such experiments. Our results therefore validate the use of GFP as a convenient standard for FRAP experiments. Importantly, we present a simple method to correct for artifacts in the accurate determination of diffusion coefficient of molecules measured using FRAP arising due to the underestimation in the effective size of the bleached spot.

Keywords

Glycerol, Microscopy, Confocal, Time Factors, Viscosity, Green Fluorescent Proteins, Temperature, Reproducibility of Results, Water, Reference Standards, Diffusion, Solutions, Luminescent Proteins, Calibration, Fluorescence Recovery After Photobleaching

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    32
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
32
Top 10%
Top 10%
Top 10%
Upload OA version
Are you the author of this publication? Upload your Open Access version to Zenodo!
It’s fast and easy, just two clicks!