Degradation of atrazine [2-chloro-4-etylamino-6-isopropylamino-1,3,5-triazine] and metolachlor [2-chloro-N-(2-ethyl-6-methylphenyl)-N-(2-methoxy-1-methylethyl)-acetamide] in sterile and non-sterile soil samples collected at two different soil depths (0–20 and 80–110 cm) and incubated under aerobic and anaerobic conditions was studied. Under aerobic conditions, the half-life of atrazine in non-sterile surface soil was 49 days. In non-sterile subsoil, the half-life of atrazine (119 days) was increased by 2.5 times compared in surface soils and was not statistically different from half-lives in sterile soils (115 and 110 days in surface soil and subsoil, respectively). Metolachlor degradation occurred only in non-sterile surface soil, with a half-life of 37 days. Under anaerobic conditions, atrazine degradation was markedly slower than under aerobic conditions, with a half-life of 124 and 407 days in non-sterile surface soil and non-sterile subsoil, respectively. No significant difference was found in atrazine degradation in both sterile surface soil (693 days) and subsoil (770 days). Under anaerobic conditions, degradation of metolachlor was observed only in non-sterile surface soil. Results suggest that atrazine degraded both chemically and biologically, while metolachlor degraded only biologically. In addition, observed Eh values of soil samples incubated under anaerobic conditions suggest a significant involvement of soil microorganisms in the overall degradation process of atrazine under anaerobic conditions.