A biogeochemical characterization of the Madeira river basin has been made to evaluate the local and global effects of possible alterations in the ecosystem caused by recent intensive occupation in Rondonia state. During the period April 1983—January 1986, sampling was made both by land and river along the tributaries and main channel of the Madeira river. The parameters analysed lead to a detailed study of the physicochemical quality of the waters of the basin and their relationship with the local geology, associated with the transport of solid material and the hydrological behavior of the ecosystem.