The distribution and time dependence of total phosphorus (TP), dissolved inorganic phosphate (PO4P), total nitrogen (TN), chlorophyll a (Chl), dichromate oxidizability (CODCr), permanganate oxidizability (CODMn), water colour (Col) and transparency (SD), pH, dissolved oxygen (O2) and oxygen saturation (O2%) in the surface water of Lake Peipsi-Pihkva are studied by using 65-parameter regression models with the help of the SAS system. The yearly means, polarity and seasonal dependence of each investigated parameter during 1985–1994 are estimated from fitted models. The bulk of data consists of 456 to 1149 measurements per parameter. L. Peipsi-Pihkva appears to be polar with respect to the majority of the studied parameters. The content of TP, PO4P, TN, Chl, CODCr, CODMn, and Col decrease from south to north, while SD has an opposite trend. pH, O2, and O2% are quite uniform all over the lake. L. Peipsi is eutrophic, L. Pihkva is hypertrophic. The lake is influenced by significant yearly and seasonal changes. It is concluded that the Velikaja River is the main source of pollution for L. Peipsi-Pihkva.