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Virology
Article . 1995 . Peer-reviewed
License: CC BY NC ND
Data sources: Crossref
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Virology
Article
License: CC BY NC ND
Data sources: UnpayWall
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Virology
Article . 1995
License: Elsevier Non-Commercial
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Virology
Article . 1996
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Two Strong 5′ Splice Sites and Competing, Suboptimal 3′ Splice Sites Involved in Alternative Splicing of Human Immunodeficiency Virus Type 1 RNA

Authors: O'REILLY, MARINA M.; MCNALLY, MARK T.; BEEMON, KAREN L.;

Two Strong 5′ Splice Sites and Competing, Suboptimal 3′ Splice Sites Involved in Alternative Splicing of Human Immunodeficiency Virus Type 1 RNA

Abstract

The human immunodeficiency virus type 1 (HIV-1) genome contains 20 exons that are alternatively spliced from 16 splice sites to generate more than 40 different mRNAs, including incompletely spliced and unspliced mRNAs. In contrast to avian retroviral RNA, which has a cis-acting element in gag that negatively regulates splicing (NRS), HIV-1 RNA did not have any NRS sequences in the gag or pol genes detectable by a splicing inhibition assay. However, this assay demonstrated that the HIV-1 first 5' splice site competed with a cellular 5' splice site, suggesting that HIV-1 may have some strong splice sites. To extend this observation, we used a splice site swapping strategy to determine the efficiency of 14 HIV-1 splice sites in human beta globin chimeras tested in transient transfection experiments. While the 1st HIV-1 5' splice site used in all spliced transcripts and the 4th 5' splice site used in most of the 2-kb transcripts were efficient, the other splice sites, including all the 3' splice sites, were less efficient, ranging in use from 25 to 60%. We propose that this range of splice site efficiencies contributes to the regulation of alternative splicing of HIV-1 mRNAs.

Related Organizations
Keywords

Binding Sites, Base Sequence, Molecular Sequence Data, Genes, myc, Exons, Genome, Viral, Transfection, Globins, Alternative Splicing, Virology, HIV-1, Humans, RNA, Viral, RNA, Messenger, Genetic Engineering, Cell Line, Transformed

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
101
Top 10%
Top 10%
Top 10%
hybrid