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Wiley Interdisciplinary Reviews - RNA
Article . 2010 . Peer-reviewed
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Mechanisms of deadenylation‐dependent decay

Authors: Chyi-Ying A, Chen; Ann-Bin, Shyu;

Mechanisms of deadenylation‐dependent decay

Abstract

AbstractDegradation of messenger RNAs (mRNAs) plays an essential role in modulation of gene expression and in quality control of mRNA biogenesis. Nearly all major mRNA decay pathways characterized thus far in eukaryotes are initiated by deadenylation, i.e., shortening of the mRNA 3′ poly(A) tail. Deadenylation is often a rate‐limiting step for mRNA degradation and translational silencing, making it an important control point for both processes. In this review, we discuss the fundamental principles that govern mRNA deadenylation in eukaryotes. We use several major mRNA decay pathways in mammalian cells to illustrate mechanisms and regulation of deadenylation‐dependent mRNA decay, including decay directed by adenine/uridine‐rich elements (AREs) in the 3′‐untranslated region (UTR), the rapid decay mediated by destabilizing elements in protein‐coding regions, the surveillance mechanism that detects and degrades nonsense‐containing mRNA [i.e., nonsense‐mediated decay (NMD)], the decay directed by miRNAs, and the default decay pathway for stable messages. Mammalian mRNA deadenylation involves two consecutive phases mediated by the PAN2–PAN3 and the CCR4–CAF1 complexes, respectively. Decapping takes place after deadenylation and may serve as a backup mechanism to trigger mRNA decay if initial deadenylation is compromised. In addition, we discuss how deadenylation impacts the dynamics of RNA processing bodies (P‐bodies), where nontranslatable mRNAs can be degraded or stored. Possible models for mechanisms of various deadenylation‐dependent mRNA decay pathways are also discussed. WIREs RNA 2011 2 167–183 DOI: 10.1002/wrna.40This article is categorized under: RNA Turnover and Surveillance > Turnover/Surveillance Mechanisms RNA Turnover and Surveillance > Regulation of RNA Stability

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Keywords

Kinetics, RNA Stability, Animals, Humans, RNA, Messenger, RNA Processing, Post-Transcriptional, Poly A, Polyadenylation, Models, Biological, Signal Transduction

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
282
Top 1%
Top 10%
Top 1%
bronze