Abstract Introduction Dermatophytosis is a zoonotic disease caused by a group of keratinophilic fungi called dermatophytes. Objectives Since the epidemiology of diseases revolves over time, this research studies the incidence of dermatophytosis among rodents referred to mycology laboratory during 2019–2021. Methods A total of 163 rodents including rabbits, guinea pigs, and hamsters suspecting having dermatophytosis were sampled by scraping lesions. Direct microscopic examination, culture, and polymerase chain reaction were done for diagnosis of dermatophytosis and identification of the etiologic agent. Results The results of this study showed that 37.4% of rodents were involved with dermatophytosis, among which 41.13% of rabbits, 25% of guinea pigs, and 26.3% of hamsters were included. Microsporum canis (52.7%) was the most isolated agent. Incidence of dermatophytosis was higher in female in rabbits while in hamsters and guinea pigs male were mostly infected. Rodents less than 6 months were more susceptible for dermatophytosis except for hamsters in which 6–12 months animals had a higher prevalence. Conclusion In conclusion, it is significant to update our knowledge about the epidemiology of dermatophytosis in rodents and other animals every few years to define valid preventive strategies. Moreover, since dermatophytes are contagious and zoonotic, it is also a priority to apply preventing methods for dermatophytosis and treat infected rodents with appropriate antifungal agents to decrease the risk of infection.