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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Proteins Structure F...arrow_drop_down
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
Proteins Structure Function and Bioinformatics
Article . 1988 . Peer-reviewed
License: Wiley Online Library User Agreement
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Energetics of charge–charge interactions in proteins

Authors: M K, Gilson; B H, Honig;

Energetics of charge–charge interactions in proteins

Abstract

AbstractElectrostatic interactions between pairs of atoms in proteins are calculated with a model based on the linearized Poisson‐Boltzmann equation. The equation is solved accurately by a method that takes into account the detailed shape of the protein. This paper presents applications to several systems. Experimental data for the interaction of ionized residues with an active site histidine in subtilisin BPN' allow the model to be tested, using various assumptions for the electrical properties of the protein and solvent. The electrostatic stabilization of the active site thiolate or rhodanese is analyzed, with attention to the influence of α‐helices. Finally, relationships between electrostatic potential and charge‐charge distance are reported for large and small globular proteins. The above results are compared with those of simpler electrostatic models, including Coulomb's law with both a distance‐dependent dielectric constant (ϵ = R) and a fixed dielectric constant (ϵ = 2), and Tanford‐Kirkwood theory. The primary conclusions are as follows: (1) The Poisson‐Boltzmann model agrees with the subtilisin data over a range of ionic strengths; (2) two α‐helices generate a large potential in the active site of rhodanese; (3) ϵ = R overestimates weak electrostatic interactions but yields relatively good results for strong ones; (4) Tanford‐Kirkwood theory is a useful approximation to detailed solutions of the linearized Poisson‐Boltzmann equation in globular proteins; and (5) the modified Tanford‐Kirkwood theory overscreens the measured electrostatic interactions in subtilisin.

Related Organizations
Keywords

Binding Sites, Protein Conformation, Electrochemistry, Proteins, Subtilisins, Calorimetry, Models, Theoretical, Thiosulfate Sulfurtransferase

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
277
Top 10%
Top 1%
Top 1%
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