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Proteins Structure Function and Bioinformatics
Article . 2014 . Peer-reviewed
License: Wiley TDM
Data sources: Crossref
UNC Dataverse
Article . 2014
Data sources: Datacite
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Analysis on long-range residue-residue communication using molecular dynamics

Analysis of Long-Range Residue-Residue Communication
Authors: Wu, Sangwook; Pedersen, Lee G.; Jun Lee, Chang;

Analysis on long-range residue-residue communication using molecular dynamics

Abstract

We investigated the possibility of inter-residue communication of side chains in barstar, an 89 residue protein, employing mutual information theory. The normalized mutual information (NMI) of the dihedral angles of the side chains was obtained from all-atom molecular dynamics simulations. The accumulated NMI from an explicit solvent equilibrated trajectory (600-ns) with free backbone exhibits a parabola–shaped distribution over the inter–residue distances (0 ~ 36 Å): smaller at the end regimes but larger in the middle regime. This analysis, plus several other measures, does not find unusual long-range communication for free backbone in explicit solvent simulations.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
9
Top 10%
Average
Average
bronze