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Proteins Structure Function and Bioinformatics
Article . 2008 . Peer-reviewed
License: Wiley Online Library User Agreement
Data sources: Crossref
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Very short peptides with stable folds: Building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone–amide interaction geometries

Authors: Lisa, Eidenschink; Brandon L, Kier; Kelly N L, Huggins; Niels H, Andersen;

Very short peptides with stable folds: Building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone–amide interaction geometries

Abstract

AbstractBy combining a favorable turn sequence with a turn flanking Trp/Trp interaction and a C‐terminal H‐bonding interaction between a backbone amide and an i‐2 Trp ring, a particularly stable (ΔGU > 7 kJ/mol) truncated hairpin, Ac‐WI‐(D‐Pro‐D‐Asn)‐KWTG‐NH2, results. In this construct and others with a W‐(4‐residue turn)‐W motif in severely truncated hairpins, the C‐terminal Trp is the edge residue in a well‐defined face‐to‐edge (FtE) aryl/aryl interaction. Longer hairpins and those with six‐residue turns retain the reversed “edge‐to‐face” (EtF) Trp/Trp geometry first observed for the trpzip peptides. Mutational studies suggest that the W‐(4‐residue turn)‐W interaction provides at least 3 kJ/mol of stabilization in excess of that due to the greater β‐propensity of Trp. The π–cation, and Trp/Gly‐HN interactions have been defined. The latter can give rise to >3 ppm upfield shifts for the Gly‐HN in ‐WXnG‐ units both in turns (n = 2) and at the C‐termini (n = 1) of hairpins. Terminal YTG units result in somewhat smaller shifts (extrapolated to 2 ppm for 100% folding). In peptides with both the EtF and FtE W/W interaction geometries, Trp to Tyr mutations indicate that Trp is the preferred “face” residue in aryl/aryl pairings, presumably because of its greater π basicity. Proteins 2009. © 2008 Wiley‐Liss, Inc.

Related Organizations
Keywords

Protein Folding, Indoles, Protein Stability, Tryptophan, Hydrogen Bonding, Amides, Protein Structure, Secondary, Cations, Point Mutation, Thermodynamics, Transition Temperature, Mutant Proteins, Peptides

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
65
Top 10%
Top 10%
Top 10%
bronze