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Protein Science
Article . 2025 . Peer-reviewed
License: CC BY
Data sources: Crossref
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PubMed Central
Other literature type . 2025
License: CC BY
Data sources: PubMed Central
Protein Science
Article . 2025
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New glycoside hydrolase families of β‐1,2‐glucanases

Authors: Masahiro Nakajima; Nobukiyo Tanaka; Sei Motouchi; Kaito Kobayashi; Hisaka Shimizu; Koichi Abe; Naoya Hosoyamada; +16 Authors

New glycoside hydrolase families of β‐1,2‐glucanases

Abstract

Abstractβ‐1,2‐Glucans are natural glucose polymers produced by bacteria and play important physiological roles, including as symbiotic or pathogenic factors and in osmoregulation. Glycoside hydrolase (GH) families related to β‐1,2‐glucan metabolism (GH144, GH162, and GH189) have recently been created by identification of two β‐1,2‐glucanases and a β‐1,2‐glucanotransferase, respectively. In this study, we further found four phylogenetically new groups with unknown functions (Groups 1–4) by sequence database analysis using enzymes from GH144 and GH162 as queries. Biochemical analysis of representative proteins in these groups revealed that the proteins in Groups 1–3 showed hydrolytic activity specific to β‐1,2‐glucan, while no substrate was found for the Group 4 protein. The kinetic parameters of the enzymes of Groups 1–3 were similar to GH144 and GH162 β‐1,2‐glucanases, indicating that these enzymes were β‐1,2‐glucanases. Optical rotation analysis revealed that the β‐1,2‐glucanases followed an anomer‐inverting mechanism. Structural analysis of the proteins in Groups 1–4 revealed that they possess (α/α)6‐barrel folds similar to those of GH144, GH162, and GH189 enzymes. Comparison of spatial positions of predicted acidic catalytic residues suggested that Groups 1–3 and GH144 had the same reaction mechanism. Overall, phylogenetic, biochemical, and structural analyses revealed that Groups 1–3 are new GH families, GH192, GH193, and GH194, respectively, and that the three families belong to clan GH‐S (clan GH, classification based on structural similarity) as GH144 and GH162.

Keywords

Models, Molecular, beta-Glucans, Glycoside Hydrolases, Bacterial Proteins, Bacteria, Phylogeny, Research Article, Substrate Specificity

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
2
Top 10%
Average
Average
Green
hybrid