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Protein Science
Article
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Protein Science
Article . 1997 . Peer-reviewed
License: Wiley Online Library User Agreement
Data sources: Crossref
Protein Science
Article . 1997
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Hydrophobicity regained

Authors: P A, Karplus;

Hydrophobicity regained

Abstract

AbstractA widespread practice is to use free energies of transfer between organic solvents and water (ΔGtransfer°) to define hydrophobicity scales for the amino acid side chains. A comparison of four ΔGtransfer° scales reveals that the values for hydrogen‐bonding side chains are highly dependent on the non‐aqueous environment. This property of polar side chains violates the assumptions underlying the paradigm of equating ΔGtransfer° with hydrophobicity or even with a generic solvation energy that is directly relevant to protein stability and ligand binding energetics. This simple regaining of the original concept of hydrophobicity reveals a flaw in approaches that use ΔGtransfer° values to derive generic estimates of the energetics of the burial of polar groups, and allows the introduction of a “pure” hydrophobicity scale for the amino acid residues.

Related Organizations
Keywords

Protein Folding, Models, Chemical, Solvents, Thermodynamics, Water, Hydrogen Bonding, Amino Acids

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    205
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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
205
Top 10%
Top 1%
Top 10%
bronze