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Protein Science
Article . 2022 . Peer-reviewed
License: CC BY
Data sources: Crossref
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PubMed Central
Article . 2022
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Protein Science
Article . 2022
Protein Science
Article . 2022 . Peer-reviewed
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Characterization of early and late transition states of the folding pathway of a SH2 domain

Authors: Angelo Toto; Francesca Malagrinò; Caterina Nardella; Valeria Pennacchietti; Livia Pagano; Daniele Santorelli; Awa Diop; +1 Authors

Characterization of early and late transition states of the folding pathway of a SH2 domain

Abstract

AbstractAlbeit SH2 domains are abundant protein–protein interaction modules with fundamental roles in the regulation of several physiological and molecular pathways in the cell, the available information about the determinants of their thermodynamic stability and folding properties are still very limited. In this work, we provide a quantitative characterization of the folding pathway of the C‐terminal SH2 domain of SHP2, conducted through a combination of site‐directed mutagenesis and kinetic (un)folding experiments (Φ‐value analysis). The energetic profile of the folding reaction of the C‐SH2 domain is described by a three‐state mechanism characterized by the presence of two transition states and a high‐energy intermediate. The production of 29 site‐directed variants allowed us to calculate the degree of native‐like interactions occurring in the early and late events of the folding reaction. Data analysis highlights the presence of a hydrophobic folding nucleus surrounded by a lower degree of structure in the early events of folding, further consolidated as the reaction proceeds towards the native state. Interestingly, residues physically located in the functional region of the domain reported unusual Φ‐values, a hallmark of the presence of transient misfolding. We compared our results with previous ones obtained for the N‐terminal SH2 domain of SHP2. Notably, a conserved complex folding mechanism implying the presence of a folding intermediate arise from comparison, and the relative stability of such intermediate appears to be highly sequence dependent. Data are discussed under the light of previous works on SH2 domains.

Country
Italy
Keywords

Protein Folding, Full‐length Papers, src Homology Domains, Kinetics, intermediate; kinetics; mutagenesis; Φ-value analysis; Kinetics; Mutagenesis; Site-Directed; Thermodynamics; Protein Folding; src Homology Domains, intermediate; kinetics; mutagenesis; Φ-value analysis, kinetics, Mutagenesis, intermediate, Mutagenesis, Site-Directed, Site-Directed, Thermodynamics, intermediate; kinetics; mutagenesis; Φ-value analysis; Kinetics; Mutagenesis, Site-Directed; Thermodynamics; Protein Folding; src Homology Domains, Φ-value analysis, mutagenesis

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
5
Top 10%
Average
Top 10%
Green
hybrid