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Protein Science
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Protein Science
Article . 2018 . Peer-reviewed
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Protein Science
Article . 2019
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Using 1HN amide temperature coefficients to define intrinsically disordered regions: An alternative NMR method

Authors: Hiroki, Okazaki; Naoki, Matsuo; Takeshi, Tenno; Natsuko, Goda; Yoshiki, Shigemitsu; Motonori, Ota; Hidekazu, Hiroaki;

Using 1HN amide temperature coefficients to define intrinsically disordered regions: An alternative NMR method

Abstract

AbstractThis report describes a cost‐effective experimental method for determining an intrinsically disordered protein (IDP) region in a given protein sample. In this area, the most popular (and conventional) means is using the amide (1HN) NMR signal chemical shift distributed in the range of 7.5–8.5 ppm. For this study, we applied an additional step: analysis of 1HN chemical shift temperature coefficients (1HN‐CSTCs) of the signals. We measured 1H–15N two‐dimensional NMR spectra of model IDP samples and ordered samples at four temperatures (288, 293, 298, and 303 K). We derived the 1HN‐CSTC threshold deviation, which gives the best correlation of ordered and disordered regions among the proteins examined (below −3.6 ppb/K). By combining these criteria with the newly optimized chemical shift range (7.8–8.5 ppm), the ratios of both true positive and true negative were improved by approximately 19% (62–81%) compared with the conventional “chemical shift‐only” method.

Related Organizations
Keywords

Intrinsically Disordered Proteins, Protein Conformation, Temperature, Protons, Amides, Nuclear Magnetic Resonance, Biomolecular

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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
9
Top 10%
Average
Top 10%
bronze