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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Medical Physicsarrow_drop_down
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
Medical Physics
Article . 2018 . Peer-reviewed
License: Wiley Online Library User Agreement
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Technical Note: An hybrid parallel implementation for EGSnrc Monte Carlo user codes

Authors: Doerner, Edgardo; Caprile Etchart, Paola F.;

Technical Note: An hybrid parallel implementation for EGSnrc Monte Carlo user codes

Abstract

PurposeThe purpose of this study was to present a parallel solution for the EGSnrc Monte Carlo code system combining MPI and OpenMP programming models as an alternative to the provided implementation, based on the use of a batch‐queueing system (BQS).MethodsRelying on a previous implementation based on OpenMP by E. Doerner and P. Caprile [Med. Phys. 44, 6672 (2017)], this work incorporates MPI features to efficiently distribute the simulation on current high‐performance computing (HPC) systems. These features are introduced through properly defined macros, which are enabled depending on the compilation flags given by the user. The presented solution was benchmarked using the DOSXYZnrc code for a 6 MV clinical photon beam impinging on an homogeneous water phantom.ResultsThe platform validation against the serial run results confirmed that the introduction of new features does not modify the final dose distribution. The performance tests indicated that the new implementation was able to handle efficiently the workload distribution among the computing units available. Using all the resources available, the hybrid simulation was 10% faster than the MPI only solution and 30% faster than the BQS implementation.ConclusionsThe hybrid method presented is a viable solution to parallelize MC simulations using the EGSnrc codes in distributed computing systems in an simple and efficient way, taking advantage of the available resources and giving the user the possibility of choosing between different parallelization schemes (only OpenMP/MPI or a combination of both).

Country
Chile
Keywords

Partículas - Simulación por computadores, Método de Montecarlo, Matemática física y química, Fotones, 510

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
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