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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Journal of Cellular ...arrow_drop_down
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
Journal of Cellular Biochemistry
Article . 2023 . Peer-reviewed
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Comprehensive analysis of liquid–liquid phase separation propensities of HSV‐1 proteins and their interaction with host factors

Authors: Sushma Subedi; Niharika Nag; Harish Shukla; Aditya K. Padhi; Timir Tripathi;

Comprehensive analysis of liquid–liquid phase separation propensities of HSV‐1 proteins and their interaction with host factors

Abstract

AbstractIn recent years, it has been shown that the liquid–liquid phase separation (LLPS) of virus proteins plays a crucial role in their life cycle. It promotes the formation of viral replication organelles, concentrating viral components for efficient replication and facilitates the assembly of viral particles. LLPS has emerged as a crucial process in the replication and assembly of herpes simplex virus‐1 (HSV‐1). Recent studies have identified several HSV‐1 proteins involved in LLPS, including the myristylated tegument protein UL11 and infected cell protein 4; however, a complete proteome‐level understanding of the LLPS‐prone HSV‐1 proteins is not available. We provide a comprehensive analysis of the HSV‐1 proteome and explore the potential of its proteins to undergo LLPS. By integrating sequence analysis, prediction algorithms and an array of tools and servers, we identified 10 HSV‐1 proteins that exhibit high LLPS potential. By analysing the amino acid sequences of the LLPS‐prone proteins, we identified specific sequence motifs and enriched amino acid residues commonly found in LLPS‐prone regions. Our findings reveal a diverse range of LLPS‐prone proteins within the HSV‐1, which are involved in critical viral processes such as replication, transcriptional regulation and assembly of viral particles. This suggests that LLPS might play a crucial role in facilitating the formation of specialized viral replication compartments and the assembly of HSV‐1 virion. The identification of LLPS‐prone proteins in HSV‐1 opens up new avenues for understanding the molecular mechanisms underlying viral pathogenesis. Our work provides valuable insights into the LLPS landscape of HSV‐1, highlighting potential targets for further experimental validation and enhancing our understanding of viral replication and pathogenesis.

Related Organizations
Keywords

Viral Proteins, Phase Separation, Proteome, Host-Pathogen Interactions, Humans, Herpes Simplex, Herpesvirus 1, Human, Virus Replication

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
8
Top 10%
Average
Top 10%
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