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Concurrency and Computation Practice and Experience
Article . 2020 . Peer-reviewed
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Cloud architecture for plant phenotyping research

Authors: Debauche, Olivier; Mahmoudi, Sidi; De Cock, Nicolas; Mahmoudi, Said; Manneback, Pierre; Lebeau, Frédéric;

Cloud architecture for plant phenotyping research

Abstract

SummaryDigital phenotyping is an emergent science mainly based on imagery techniques. The tremendous amount of data generated needs important cloud computing for their processing. The coupling of recent advance of distributed databases and cloud computing offers new possibilities of big data management and data sharing for the scientific research. In this paper, we present a solution combining a lambda architecture built around Apache Druid and a hosting platform leaning on Apache Mesos. Lambda architecture has already proved its performance and robustness. However, the capacity of ingesting and requesting of the database is essential and can constitute a bottleneck for the architecture, in particular, for in terms of availability and response time of data. We focused our experimentation on the response time of different databases to choose the most adapted for our phenotyping architecture. Apache Druid has shown its ability to respond to typical queries of phenotyping applications in times generally inferior to the second.

Countries
Belgium, France, Belgium
Keywords

[SDE] Environmental Sciences, Sciences informatiques, cloud architecture, [SDE.IE]Environmental Sciences/Environmental Engineering, Ingénierie électrique & électronique, Life sciences, research application hosting platform, Computer science, 004, Engineering, computing & technology, Ingénierie, informatique & technologie, Biologie végétale (sciences végétales, sylviculture, mycologie...), plant phenotyping, [SDE]Environmental Sciences, Architecture, Sciences du vivant, [SDE.IE] Environmental Sciences/Environmental Engineering, lambda architecture, Phytobiology (plant sciences, forestry, mycology...), digital phenotyping, Electrical & electronics engineering

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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
12
Top 10%
Top 10%
Top 10%
Green
bronze