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Probing Ambiguous Base‐Pairs by Genetic Transformation with XNA Templates

Authors: Pezo, Valérie; Schepers, Guy; Lambertucci, Catia; Marlière, Philippe; Herdewijn, Piet;

Probing Ambiguous Base‐Pairs by Genetic Transformation with XNA Templates

Abstract

AbstractThe templating potential of anhydrohexitol oligonucleotides bearing ambiguous bases was studied in vivo, by using a selection screen for mosaic heteroduplex plasmids in Escherichia coli. 1,5‐Anhydro‐2,3‐dideoxy‐2‐(5‐nitroindazol‐1‐yl)‐D‐arabino‐hexitol showed the greatest ambiguity among the three nucleosides tested. At most two successive ambiguous bases could be tolerated on hexitol templates read in bacterial cells. Hexitol nucleosides bearing simplified heterocycles thus stand as promising monomers for generating random DNA sequences in vivo from defined synthetic oligonucleotides.

Countries
France, Belgium, Italy, France
Keywords

Biochemistry & Molecular Biology, 3101 Biochemistry and cell biology, unnatural bases, XNA, Oligonucleotides, Chemistry, Medicinal, 0601 Biochemistry and Cell Biology, OLIGONUCLEOTIDES, Sugar Alcohols, Transformation, Genetic, Nucleic Acids, Pharmacology & Pharmacy, Base Pairing, IN-VIVO, 3404 Medicinal and biomolecular chemistry, NUCLEOSIDE, Science & Technology, 0304 Medicinal and Biomolecular Chemistry, Molecular Structure, Organic Chemistry, DNA, Templates, Genetic, [SDV] Life Sciences [q-bio], polymerization, universal bases, HNA, REPLICATION, ACID, POLYMERS, Life Sciences & Biomedicine, mutagenesis, HYBRIDIZATION

  • BIP!
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    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    14
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
14
Top 10%
Average
Average
Green
bronze