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Enzyme‐Specific Activation versus Leaving Group Ability

Authors: de Beer, R.J.A.C.; Bogels, B.; Schaftenaar, G.; Schaftenaar, G.; Zarzycka, B.; Quaedflieg, P.J.L.M.; van Delft, F.L.; +2 Authors

Enzyme‐Specific Activation versus Leaving Group Ability

Abstract

AbstractEnzyme‐specific activation and the substrate mimetics strategy are effective ways to circumvent the limited substrate recognition often encountered in protease‐catalyzed peptide synthesis. A key structural element in both approaches is the guanidinophenyl (OGp) ester, which enables important interactions for affinity and recognition by the enzyme—at least, this is usually the explanation given for its successful application. In this study we show that leaving group ability is of equal or even greater importance. To this end we used both experimental and computational methods: 1) synthesis of close analogues of OGp, and their evaluation in a dipeptide synthesis assay with trypsin, 2) molecular docking studies to provide insights into the binding mode, and 3) ab initio calculations to evaluate their electronic properties.

Country
Netherlands
Keywords

Models, Molecular, Bioinformatics, Protein Conformation, Hydrolysis, Molecular Mimicry, Esters, Hydrogen Bonding, Synthetic Organic Chemistry, Dipeptides, Full Papers, Substrate Specificity, Enzyme Activation, Solutions, Biocatalysis, Quantum Theory, NCMLS 7: Chemical and physical biology, Biological Assay, Trypsin

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    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    3
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Average
Average
Average
Green
bronze