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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Biopolymersarrow_drop_down
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
Biopolymers
Article . 1975 . Peer-reviewed
License: Wiley Online Library User Agreement
Data sources: Crossref
Biopolymers
Article . 1975
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Conformational geometry and vibrational frequencies of nucleic acid chains

Authors: E B, Brown; W L, Peticolas;

Conformational geometry and vibrational frequencies of nucleic acid chains

Abstract

AbstractNormal coordinate analysis of diethyl phosphate has been made, which predicts all observed Raman frequencies in the range 170–1300 cm−1. The force constants from this calculation have been transferred to a vibrational calculation for a simplified model of the backbone of nucleic acids, which also involves the OPO2−O phosphate group and the C5′C4′C3′linkage of the ribose. The coordinates of these atoms are those recently given by Arnott and Hukins, which place the ribose ring of B‐DNA in a C3′‐exo conformation. This simple polymer model appears to be able to describe adequately the frequency‐dependent changes observed in the Raman spectra arising from the backbone vibrations of nucleic acid in going from the B‐ to A‐form. The symmetric OPO diester stretch increases in frequency from about 787 cm−1 in the B‐form to 807 cm−1 in the A‐form. The increased frequency characteristic of the A‐form is due to the combining of the diester stretch with vibrations involving the C5′, C4′, and C3′ nuclei. The frequency of the symmetric OPO diester stretch is shown to be very dependent on the conformation of the ribose ring, indicating that in polynucleotides the ribose ring takes on one of two rigid conformations: C3′‐endo for A‐form or C3′‐exo for B‐form and “disordered” polynucleotides. The calculation lends confirmation to the atomic coordinates of Arnott and Hukins since the use of other geometries with the same force constants failed to give results in agreement with experimental evidence. The calculations also demonstrate the lowering effect of hydration on the anionic PO stretching frequencies. Experimental results show that the 814‐cm−1 band observed in the spectra of 5′GMP gel arises from a different vibrational mode than that of the 814‐cm−1 band of A‐DNA.

Related Organizations
Keywords

Pentosephosphates, Chemical Phenomena, Ribose, Spectrum Analysis, Polynucleotides, DNA, Vibration, Chemistry, X-Ray Diffraction, Nucleic Acid Conformation

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
115
Top 10%
Top 1%
Top 10%
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