AbstractThe toothed members of Pterosauria display an extremely wide range of tooth morphologies that supported a variety of feeding habits. Histological studies on the teeth of different pterosaur clades are potentially valuable in understanding the development of their tooth diversity. In this study, we used histological sections and scanning electron microscopy to describe and interpret the tooth microstructure of Hamipterus (Pterodactyloidea). Our analysis is based on seven teeth of Hamipterus (six isolated and one from a skull) from the Lower Cretaceous collected in Hami, China. Our results show that the enamel on the tooth crown is thin (~25 μm) in Hamipterus and covers only approximately half of the tooth crown. This thin enamel of the Hamipterus tooth makes it vulnerable and often becomes damaged during taphonomic and diagenetic processes. The radicular pulp inside the conical‐shaped root shows a spindle space with a small foramen at the bottom, while the coronal pulp shows a small tunnel (100–140 μm in diameter). We estimate that the small teeth of Hamipterus likely took approximately 80 days to form. Furthermore, the tooth has Andresen lines, which represent 7–15 days period. For stable articulation of the tooth in the alveolus, the thick cellular cementum is concentrated on the lingual side of the root. The acellular cementum (~40 μm thick) layer runs from the root to the partial tooth crown.