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Angewandte Chemie International Edition
Article . 2011 . Peer-reviewed
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Barcoded Nucleotides

Authors: Baccaro, Anna; Steck, Anna-Lena; Marx, Andreas;

Barcoded Nucleotides

Abstract

DNA as an information storage system is simple and at the same time complex owing to the various different arrangements of the four natural nucleotides.[1] The DNA synthesis by DNA polymerases is intriguing, since these enzymes are able to catalyze the elongation of the primer strand by recognizing the DNA template and selecting the corresponding nucleotide.[1b, 2] This feature can be exploited to diversify the four-base-code by substitution of the natural substrates with modified analogues.[3] Nucleotide analogues equipped with various marker groups (e.g. dyes, tags, or spin labels[4])can be employed in DNA polymerase catalyzed reactions to increase the application scope of DNA (e.g. sequencing,structural characterization, and immobilization[4d, 5]). The “information” embedded in the marker groups allow conclusions to be drawn from the evaluation of the resulting signals. A significant gain in information would result by embedding a marker that exhibits the properties of a barcode. Typically, the barcode label bears no descriptive data but it consists of a series of signs which code for the deposited information (the term was used in other contexts with DNA before).[6] For universal adoption the barcode should be simple, affixed easily, and allow a reliable assignment of the deposited information. Oligodeoxynucleotides (ODNs) meet the requirements of a barcode label to a great extent, since they have a simple code and can be distinguished bycharacteristics such as self-assembly and hybridization specificity. For a simple introduction of these DNA barcode labels into DNA, an enzyme-mediated approach utilizing ODN-modified nucleotides would be desirable.[7] However, the acceptance of these modified nucleotides by DNA polymerases should be hampered by the steric demand of the ODN-modified nucleotides. Herein, we show that despitethe steric demand the enzymatic synthesis of barcoded DNA is feasible by using ODN-modified nucleoside triphosphatesthat are about 40-times larger than the natural nucleotides and longer than the diameter of a DNA polymerase (Figure 1A).

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Keywords

info:eu-repo/classification/ddc/570, oligonucleotides, Nucleotides, Nucleic Acid Hybridization, DNA-Directed DNA Polymerase, DNA polymerase, Polymorphism, Single Nucleotide, nucleotides, enzymatic synthesis, Oligodeoxyribonucleotides, Humans, raf Kinases, microarray, Thiocyanates, Fluorescent Dyes, Oligonucleotide Array Sequence Analysis

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    65
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
65
Top 10%
Top 10%
Top 10%
Green
bronze