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A new discrete particle swarm algorithm applied to attribute selection in a bioinformatics data set

Authors: Correa, Elon S.; Freitas, Alex A.; Johnson, Colin G.;

A new discrete particle swarm algorithm applied to attribute selection in a bioinformatics data set

Abstract

Many data mining applications involve the task of build- ing a model for predictive classification. The goal of such a model is to classify examples (records or data instances) into classes or categories of the same type. The use of variables (attributes) not related to the classes can reduce the accu- racy and reliability of a classification or prediction model. Superfluous variables can also increase the costs of build- ing a model - particularly on large data sets. We propose a discrete Particle Swarm Optimization (PSO) algorithm de- signed for attribute selection. The proposed algorithm deals with discrete variables, and its population of candidate solu- tions contains particles of different sizes. The performance of this algorithm is compared with the performance of a standard binary PSO algorithm on the task of selecting at- tributes in a bioinformatics data set. The criteria used for comparison are: (1) maximizing predictive accuracy; and (2) finding the smallest subset of attributes.

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Keywords

QH324.2, QA76

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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
41
Top 10%
Top 10%
Top 10%
Green