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Journal of Graph Algorithms and Applications
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https://dx.doi.org/10.48550/ar...
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Graph Motif Problems Parameterized by Dual

Graph motif problems parameterized by dual
Authors: Fertin, Guillaume; Komusiewicz, Christian;

Graph Motif Problems Parameterized by Dual

Abstract

Let $G=(V,E)$ be a vertex-colored graph, where $C$ is the set of colors used to color $V$. The ${\rm G{\small RAPH}~M{\small OTIF}}$ (or $\rm GM$) problem takes as input $G$, a multiset $M$ of colors built from $C$, and asks whether there is a subset $S\subseteq V$ such that (i) $G[S]$ is connected and (ii) the multiset of colors obtained from $S$ equals $M$. The ${\rm C{\small OLORFUL}~G{\small RAPH}~M{\small OTIF}}$ (or ${\rm CGM}$) problem is the special case of $\rm GM$ in which $M$ is a set, and the ${\rm L{\small IST-COLORED}~G{\small RAPH}~M{\small OTIF}}$ (or $\rm LGM$) problem is the extension of $\rm GM$ in which each vertex $v$ of $V$ may choose its color from a list $\mathcal L(v)\subseteq C$ of colors. We study the three problems $\rm GM$, $\rm CGM$, and $\rm LGM$, parameterized by the dual parameter $\ell:=|V|-|M|$. For general graphs, we show that, assuming the strong exponential time hypothesis, $\rm CGM$ has no $(2-\epsilon)^\ell\cdot |V|^{\mathcal O(1)}$-time algorithm, which implies that a previous algorithm, running in $\mathcal O(2^\ell\cdot |E|)$ time is optimal [Betzler et al., IEEE/ACM TCBB 2011]. We also prove that $\rm LGM$ is W[1]-hard with respect to $\ell$ even if we restrict ourselves to lists of at most two colors. Finally, we show that if the input graph is a tree, then $\rm GM$ can be solved in $\mathcal O(3^\ell\cdot |V|)$ time but admits no polynomial-size problem kernel, while $\rm CGM$ can be solved in $\mathcal O(\sqrt{2}^{\ell} + |V|)$ time and admits a polynomial-size problem kernel.

Keywords

[INFO.INFO-CC]Computer Science [cs]/Computational Complexity [cs.CC], FOS: Computer and information sciences, [INFO.INFO-DS]Computer Science [cs]/Data Structures and Algorithms [cs.DS], lowerbounds, colorful graph motif problem, Computational Complexity (cs.CC), 004, subgraph problem, Computer Science - Computational Complexity, Coloring of graphs and hypergraphs, kernelization, Computer Science - Data Structures and Algorithms, FOS: Mathematics, Mathematics - Combinatorics, Data Structures and Algorithms (cs.DS), NP-hard problem, Combinatorics (math.CO), [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], fixed-parameter algorithm, ddc: ddc:004

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
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