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https://doi.org/10.4230/lipics...
Article . 2022
License: CC BY
Data sources: Sygma
https://dx.doi.org/10.48550/ar...
Article . 2021
License: CC BY
Data sources: Datacite
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Optimizing Safe Flow Decompositions in DAGs

Authors: Khan, Shahbaz; Tomescu, Alexandru I.;

Optimizing Safe Flow Decompositions in DAGs

Abstract

Network flow is one of the most studied combinatorial optimization problems having innumerable applications. Any flow on a directed acyclic graph $G$ having $n$ vertices and $m$ edges can be decomposed into a set of $O(m)$ paths. In some applications, each solution (decomposition) corresponds to some particular data that generated the original flow. Given the possibility of multiple optimal solutions, no optimization criterion ensures the identification of the correct decomposition. Hence, recently flow decomposition was studied [RECOMB22] in the Safe and Complete framework, particularly for RNA Assembly. They presented a characterization of the safe paths, resulting in an $O(mn+out_R)$ time algorithm to compute all safe paths, where $out_R$ is the size of the raw output reporting each safe path explicitly. They also showed that $out_R$ can be $Ω(mn^2)$ in the worst case but $O(m)$ in the best case. Hence, they further presented an algorithm to report a concise representation of the output $out_C$ in $O(mn+out_C)$ time, where $out_C$ can be $Ω(mn)$ in the worst case but $O(m)$ in the best case. In this work, we study how different safe paths interact, resulting in optimal output-sensitive algorithms requiring $O(m+out_R)$ and $O(m+out_C)$ time for computing the existing representations of the safe paths. Further, we propose a new characterization of the safe paths resulting in the {\em optimal} representation of safe paths $out_O$, which can be $Ω(mn)$ in the worst case but requires optimal $O(1)$ space for every safe path reported, with a near-optimal computation algorithm. Overall we further develop the theory of safe and complete solutions for the flow decomposition problem, giving an optimal algorithm for the explicit representation, and a near-optimal algorithm for the optimal representation of the safe paths

16 pages, 6 figures, Accepted at ESA 2022

Keywords

safety, FOS: Computer and information sciences, flows, Computer and information sciences, directed acyclic graphs, Mathematics of computing → Graph algorithms, Theory of computation → Network flows, 004, 620, networks, Computer Science - Data Structures and Algorithms, Data Structures and Algorithms (cs.DS), Networks → Network algorithms, Mathematics of computing → Network flows, ddc: ddc:004

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
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Green