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Mathematical Biosciences
Article . 2015 . Peer-reviewed
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Article . 2015
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https://dx.doi.org/10.48550/ar...
Article . 2014
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Tree-like reticulation networks—When do tree-like distances also support reticulate evolution?

Tree-like reticulation networks -- when do tree-like distances also support reticulate evolution?
Authors: Francis, Andrew R. (R7685); Steel, Mike;

Tree-like reticulation networks—When do tree-like distances also support reticulate evolution?

Abstract

Hybrid evolution and horizontal gene transfer (HGT) are processes where evolutionary relationships may more accurately be described by a reticulated network than by a tree. In such a network, there will often be several paths between any two extant species, reflecting the possible pathways that genetic material may have been passed down from a common ancestor to these species. These paths will typically have different lengths but an `average distance' can still be calculated between any two taxa. In this article, we ask whether this average distance is able to distinguish reticulate evolution from pure tree-like evolution. We consider two types of reticulation networks: hybridization networks and HGT networks. For the former, we establish a general result which shows that average distances between extant taxa can appear tree-like, but only under a single hybridization event near the root; in all other cases, the two forms of evolution can be distinguished by average distances. For HGT networks, we demonstrate some analogous but more intricate results.

19 pages, 9 figures. Revised version includes clarification in proof of Theorem 2, and a new figure (Fig 9)

Related Organizations
Keywords

Gene Transfer, Horizontal, Applications of graph theory, biomathematics, Populations and Evolution (q-bio.PE), Models, Theoretical, phylogeny, Evolution, Molecular, Problems related to evolution, 970101 - Expanding Knowledge in the Mathematical Sciences, FOS: Biological sciences, hybridisation, 010104 - Combinatorics and Discrete Mathematics (excl. Physical Combinatorics), genetic transformation, horizontal gene transfer, 010202 - Biological Mathematics, Genetics and epigenetics, reticulation network, Quantitative Biology - Populations and Evolution, Phylogeny, distance measures

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
9
Top 10%
Average
Average
Green
bronze